Last updated: 2018-08-20

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correlation matrix of all regulator expression

spearman correlation of all regulator expression with ssgsea scores of target sets

Spearman correlation of all regulator expression with ssgsea scores of goslim

Session information

sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.4

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
 [1] grid      parallel  stats4    stats     graphics  grDevices utils    
 [8] datasets  methods   base     

other attached packages:
 [1] knitr_1.20           heatmaply_0.15.2     viridis_0.5.1       
 [4] viridisLite_0.3.0    plotly_4.8.0         gplots_3.0.1        
 [7] GO.db_3.6.0          GSEABase_1.42.0      graph_1.58.0        
[10] GSVA_1.28.0          reshape_0.8.7        ggplot2_3.0.0       
[13] GEOquery_2.48.0      annotate_1.58.0      XML_3.98-1.11       
[16] org.Hs.eg.db_3.6.0   AnnotationDbi_1.42.1 IRanges_2.14.10     
[19] S4Vectors_0.18.3     Biobase_2.40.0       BiocGenerics_0.26.0 
[22] limma_3.36.2         htmlwidgets_1.2     

loaded via a namespace (and not attached):
 [1] colorspace_1.3-2    class_7.3-14        modeltools_0.2-22  
 [4] mclust_5.4.1        rprojroot_1.3-2     flexmix_2.3-14     
 [7] bit64_0.9-7         mvtnorm_1.0-8       xml2_1.2.0         
[10] codetools_0.2-15    R.methodsS3_1.7.1   robustbase_0.93-2  
[13] geneplotter_1.58.0  shinythemes_1.1.1   jsonlite_1.5       
[16] workflowr_1.1.1     cluster_2.0.7-1     kernlab_0.9-26     
[19] R.oo_1.22.0         shiny_1.1.0         readr_1.1.1        
[22] compiler_3.5.0      httr_1.3.1          backports_1.1.2    
[25] assertthat_0.2.0    lazyeval_0.2.1      later_0.7.3        
[28] htmltools_0.3.6     tools_3.5.0         bindrcpp_0.2.2     
[31] gtable_0.2.0        glue_1.2.0          reshape2_1.4.3     
[34] dplyr_0.7.6         Rcpp_0.12.17        trimcluster_0.1-2.1
[37] gdata_2.18.0        crosstalk_1.0.0     iterators_1.0.10   
[40] fpc_2.1-11.1        stringr_1.3.1       mime_0.5           
[43] gtools_3.8.1        dendextend_1.8.0    DEoptimR_1.0-8     
[46] MASS_7.3-50         scales_0.5.0        TSP_1.1-6          
[49] hms_0.4.2           promises_1.0.1      RColorBrewer_1.1-2 
[52] yaml_2.1.19         memoise_1.1.0       gridExtra_2.3      
[55] stringi_1.2.3       RSQLite_2.1.1       gclus_1.3.1        
[58] foreach_1.4.4       seriation_1.2-3     caTools_1.17.1     
[61] rlang_0.2.1         pkgconfig_2.0.1     prabclus_2.2-6     
[64] bitops_1.0-6        evaluate_0.10.1     lattice_0.20-35    
[67] purrr_0.2.5         bindr_0.1.1         labeling_0.3       
[70] bit_1.1-14          tidyselect_0.2.4    plyr_1.8.4         
[73] magrittr_1.5        R6_2.2.2            DBI_1.0.0          
[76] pillar_1.2.3        whisker_0.3-2       withr_2.1.2        
[79] RCurl_1.95-4.10     nnet_7.3-12         tibble_1.4.2       
[82] KernSmooth_2.23-15  rmarkdown_1.10      data.table_1.11.4  
[85] blob_1.1.1          git2r_0.22.1        digest_0.6.15      
[88] diptest_0.75-7      webshot_0.5.0       xtable_1.8-2       
[91] tidyr_0.8.1         httpuv_1.4.4.2      R.utils_2.6.0      
[94] munsell_0.5.0       registry_0.5

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